SNP Profiles of AMAZ 12 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AA	CG	CC	CT	CT	GT	CT	AT	AG	TT	AA	CT	AT
1._GC-05-158-4-11	CC	AA	CG	CC	CT	CT	GT	CT	AT	AG	TT	AA	CT	AT
2._GC-05-158-4-11	CC	AA	CG	CC	CT	CT	GT	CT	AT	AG	TT	AA	CT	AT
3._GC-05-010-1-10	CC	AA	CG	CC	CT	CT	GT	CT	AT	AG	TT	AA	CT	AT
4._GC-05-010-1-10	CC	AA	CG	CC	CT	CT	GT	CT	AT	AG	TT	AA	CT	AT
5._GC-05-010-1-10	CC	AA	CG	CC	CT	CT	GT	CT	AT	AG	TT	AA	CT	AT
6._GC-05-010-1-10	CC	AA	CG	CC	CT	CT	GT	CT	AT	AG	TT	AA	CT	AT
7._GC-05-010-1-10	CC	AA	CG	CC	CT	CT	GT	CT	AT	AG	TT	AA	CT	AT
8._GC-05-158-4-11	CC	AA	CG	CC	CT	CT	GT	CT	AT	AG	TT	AA	CT	AT
9._AMAZ_12	CC	AA	CG	CC	CT	CT	GT	CT	AT	AG	TT	AA	CT	AT
10._AMAZ_12	CC	AA	CG	CC	CT	CT	GT	CT	AT	AG	TT	AA	CT	AT
11._AMAZ_12	CC	AA	CG	CC	CT	CT	GT	CT	AT	AG	TT	AA	CT	AT
12._AMAZ_12	CC	AA	CG	CC	CT	CT	GT	CT	AT	AG	TT	AA	CT	AT
13._AMAZ_12	CC	AA	CG	CC	CT	CT	GT	CT	AT	AG	TT	AA	CT	AT
14._AMAZ_12	CC	AA	CG	CC	CT	CT	GT	CT	AT	AG	TT	AA	CT	AT
15._AMAZ_12	CC	AA	CG	CC	CT	CT	GT	CT	AT	AG	TT	AA	CT	AT
16._AMAZ_12	CC	AA	CG	CC	CT	CT	GT	CT	AT	AG	TT	AA	CT	AT
17._GC-05-158-4-11	CC	AA	CG	CC	CT	CT	GT	CT	AT	AG	TT	AA	CT	AT
18._GC-05-158-4-11	CC	AA	CG	CC	CT	CT	GT	CT	AT	AG	TT	AG	CT	AT
19._AMAZ_12	CC	AA	CG	CC	CT	CT	GT	CT	AT	AG	TT	AG	CT	AT
20._AMAZ_12	CC	AA	GG	TT	CT	TT	TT	CC	AA	GG	CT	AG	CT	AT
21._RUQ_334	CC	AG	GG	TT	CT	TT	TT	CC	AA	GG	CT	AG	CT	AT
22._RUQ_334	_	AA	GG	TT	_	_	TT	_	_	_	CT	AG	_	_
23._RUQ_334	_	_	GG	_	_	_	TT	_	_	GG	_	AG	_	_
24._RUQ_334b	_	_	GG	_	_	_	TT	_	_	GG	_	AG	_	_
25._RUQ_334	GG	AA	CC	AA	AG	AA	AA	_	AA	GG	AG	AG	AG	AT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG	GG
1._GC-05-158-4-11	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG	GG
2._GC-05-158-4-11	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG	GG
3._GC-05-010-1-10	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG	GG
4._GC-05-010-1-10	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG	GG
5._GC-05-010-1-10	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG	GG
6._GC-05-010-1-10	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG	GG
7._GC-05-010-1-10	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG	GG
8._GC-05-158-4-11	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG	GG
9._AMAZ_12	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG	GG
10._AMAZ_12	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG	GG
11._AMAZ_12	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG	GG
12._AMAZ_12	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG	GG
13._AMAZ_12	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG	GG
14._AMAZ_12	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG	GG
15._AMAZ_12	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG	GG
16._AMAZ_12	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG	GG
17._GC-05-158-4-11	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG	GG
18._GC-05-158-4-11	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG	GG
19._AMAZ_12	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG	GG
20._AMAZ_12	GG	TT	CT	CG	GG	AA	CT	AA	GG	GT	CC	CC	AA	GG
21._RUQ_334	GG	TT	CT	CG	GG	AA	CT	AA	GG	GT	CC	CC	AA	AG
22._RUQ_334	_	_	TT	CG	GG	_	CT	AA	CG	GT	CC	CC	AA	_
23._RUQ_334	_	_	_	GG	GG	AA	_	AA	GG	_	_	AC	_	_
24._RUQ_334b	_	_	_	CG	GG	AA	_	AA	GG	_	_	CC	_	_
25._RUQ_334	GG	AA	AG	CG	CC	_	AG	AA	CG	AC	_	CC	_	GG

	29	30	31	32	33	34	35	36
_Input profile	AT	CT	AA	CG	CT	GT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
1._GC-05-158-4-11	AT	CT	AA	CG	CT	GT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
2._GC-05-158-4-11	AT	CT	AA	CG	CT	GT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
3._GC-05-010-1-10	AT	CT	AA	CG	CT	GT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
4._GC-05-010-1-10	AT	CT	AA	CG	CT	GT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
5._GC-05-010-1-10	AT	CT	AA	CG	CT	GT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
6._GC-05-010-1-10	AT	CT	AA	CG	CT	GT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
7._GC-05-010-1-10	AT	CT	AA	CG	CT	GT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
8._GC-05-158-4-11	AT	CT	AA	CG	CT	GT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
9._AMAZ_12	AT	CT	AA	CG	CT	GT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
10._AMAZ_12	AT	CT	AA	CG	CT	GT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
11._AMAZ_12	AT	CT	AA	CG	CT	GT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
12._AMAZ_12	AT	CT	AA	CG	CT	GT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
13._AMAZ_12	AT	CT	AA	CG	CT	GT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
14._AMAZ_12	AT	CT	AA	CG	CT	GT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
15._AMAZ_12	AT	CT	AA	CG	CT	GT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
16._AMAZ_12	AT	CT	AA	CG	_	GT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
17._GC-05-158-4-11	AT	CT	AA	CG	_	GT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
18._GC-05-158-4-11	AT	CT	AA	CG	CT	GT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
19._AMAZ_12	AT	CT	AA	CG	CT	GT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
20._AMAZ_12	AT	CC	GG	CG	CC	TT	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X
21._RUQ_334	AT	CC	GG	CG	CC	GT	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X
22._RUQ_334	AT	CC	GG	CG	CC	GT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
23._RUQ_334	_	_	GG	_	_	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X
24._RUQ_334b	_	_	GG	_	_	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X
25._RUQ_334	AT	GG	GG	CG	GG	AC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: AMAZ_12

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Mars Center for Cocoa Science, Brazil

Location: 5411 5

Dapeng Zhang, 2016

1._AMAZ_12 GC-05-158-4-11

identical
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

2._AMAZ_12 GC-05-158-4-11

identical
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP4

3._AMAZ_12 GC-05-010-1-10

identical
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

4._AMAZ_12 GC-05-010-1-10

identical
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP2

5._AMAZ_12 GC-05-010-1-10

identical
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

6._AMAZ_12 GC-05-010-1-10

identical
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1

7._AMAZ_12 GC-05-010-1-10

identical
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

8._AMAZ_12 GC-05-158-4-11

identical
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

9._AMAZ_12

identical
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5110 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

10._AMAZ_12

identical
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5110 3

Dapeng Zhang, 2016

11._AMAZ_12

identical
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5110 5

Dapeng Zhang, 2016

12._AMAZ_12

identical
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5110 2 > FP

Dapeng Zhang, 2016

13._AMAZ_12

identical
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5110 4 > FP

Dapeng Zhang, 2016

14._AMAZ_12

identical
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5411 3

Dapeng Zhang, 2016

15._AMAZ_12

identical
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5411 1 > FP

Dapeng Zhang, 2016

16._AMAZ_12

identical
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5411 2 > FP

Dapeng Zhang, 2016

17._AMAZ_12 GC-05-158-4-11

identical
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP3

18._AMAZ_12 GC-05-158-4-11

98.6 %
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

19._AMAZ_12

98.6 %
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5411 4

Dapeng Zhang, 2016

20._AMAZ_12

66.7 %
36 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B B94 T2

Dapeng Zhang, 2016

21._AMAZ_12 RUQ_334

65.3 %
36 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

22._AMAZ_12 RUQ_334

59.1 %
22 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

23._AMAZ_12 RUQ_334

54.5 %
11 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

24._AMAZ_12 RUQ_334b

45.5 %
11 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

25._AMAZ_12 RUQ_334

35.9 %
32 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1270	7	TcSNP1253	8	TcSNP1165	9	TcSNP1075	10	TcSNP1062
11	TcSNP1060	12	TcSNP998	13	TcSNP994	14	TcSNP953	15	TcSNP929
16	TcSNP917	17	TcSNP891	18	TcSNP872	19	TcSNP723	20	TcSNP645
21	TcSNP619	22	TcSNP591	23	TcSNP577	24	TcSNP560	25	TcSNP534
26	TcSNP529	27	TcSNP469	28	TcSNP429	29	TcSNP372	30	TcSNP242
31	TcSNP230	32	TcSNP226	33	TcSNP151	34	TcSNP150	35	TcSNP32
36	TcSNP25